BtaALTA0034123-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2753359-2754356:+
Coord C1 exon
chr25:2753359-2753554
Coord A exon
NA
Coord C2 exon
chr25:2754265-2754356
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TGGCTCCATTTCACCCACAGTGG
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTGCAGTCCAGGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAGCAGCAGAGGCCCCAGGCTTCCAGCTGAAGCCAGCAGAGTCCCAGCCAGTGGGCATGTCCCTGGAGGAAGAAGTTTGGAATATACACCAGGGTCTACAAGAGCCACTGAGCAGGAATACCCACAAAGAACCTGAGCCCGTATGTGAGAGGG
Seq A exon
NA
Seq C2 exon
TGGGGCCTGCTCACCGGATCCTAGCCTTTCCTGAGCAGACAGACACCAAAGACTGGACAGTGGCACCTGAGCTTGTCTTGCCTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381-5-3,5-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAGTCCAGGAGCTG
R:
CTGGGACTCAGGCAAGACAAG
Band lengths:
288-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development