BtaALTA0034124-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2754265-2754759:+
Coord C1 exon
chr25:2754265-2754356
Coord A exon
NA
Coord C2 exon
chr25:2754675-2754759
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGCCATGTATTTTTCCCAGGAA
3' ss Score
7.63
Exon sequences
Seq C1 exon
TGGGGCCTGCTCACCGGATCCTAGCCTTTCCTGAGCAGACAGACACCAAAGACTGGACAGTGGCACCTGAGCTTGTCTTGCCTGAGTCCCAG
Seq A exon
NA
Seq C2 exon
GAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAAGAAAACTATGAGACTGTCATCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGATCCTAGCCTTTCCTGA
R:
TGCATTACATCATTGTAGAGGGCC
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development