BtaALTA0034125-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2758379-2758772:+
Coord C1 exon
chr25:2758379-2758489
Coord A exon
chr25:2758669-2758671
Coord C2 exon
chr25:2758672-2758772
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTTTCTCACATTTATTCCAGCAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
CATTATTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGAGAAGAGCCATGGGTTCAAAGACCCCTGGAGTTCAAGGACAGTTCTGAAGAGCTGCCTGCAG
Seq A exon
CAG
Seq C2 exon
GGCTGAAGCTTAAAAATGACACTGAAAATATTCAGTCTCTATGTCTTTCTGACTTAGAAATACAAGCACCAGTAGCTATAGCATCAAGAAAGGCCAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381-9-9,9-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.137
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.0),PF0013017=C1_1=WD(100=22.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGAAGAGCTGCCTGCAG
R:
TGCTATAGCTACTGGTGCTTGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development