BtaALTA0034200-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008943 | ZSCAN12
Description
Bos taurus zinc finger and SCAN domain containing 12 (ZSCAN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001077138]
Coordinates
chr23:30079857-30081203:+
Coord C1 exon
chr23:30079857-30079976
Coord A exon
chr23:30080717-30080807
Coord C2 exon
chr23:30080808-30081203
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GATGATAGCTTCTCCCTCAGTTC
3' ss Score
2.8
Exon sequences
Seq C1 exon
CTTCTGCTGGCCTCCTGGGGCTGCGGTTGAGCGAGCTTTTGCTGCGAACGCGGCGGGTGGGCTGCTGGCCGTCTTCCGGCCAGGCTGGAGCGGGGCATCCTCTGGTGCTCACTTGCCCAG
Seq A exon
TTCCAGCCAGAAAAAAACGACACAGGAGATCTTGCTTGAAGCATTGATAAGCTTTTGTATAGCAATGATGGCATATACTTGGTCTATCCAG
Seq C2 exon
GCCATGAAGGACCGGGAAGAACTTTTGGAAGTAAAGATAGAGGAAGAGGAGCTGGAGGAGGAGCATAAATATGCCACTACACAGGATCAGAACCTTCAAAAGAACACCACCCACAGTAGGGAGGTCTTCCGACGGTACTTCAGGCAGTTCTGCTACCAGGAAACATCTGGGCCCCGTGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGCTGAAGCCAGAGACCCACACCAAAGAGCAGATTCTGGAACTACTGGTGCTGGAGCAGTTCCTGACCATCTTGCCTGAGGAGCTCCAAGCCTGGGTCCAGGAACAGCATCCAGAGAGTGGGGAAGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGTTGGATGAGCCAGGATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008943-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.264
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCTGGTGCTCACTTGC
R:
GAACTGCCTGAAGTACCGTCG
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development