BtaALTA0034202-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112933623-112937209:-
Coord C1 exon
chr3:112936526-112937209
Coord A exon
NA
Coord C2 exon
chr3:112933623-112934048
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CTCTTCACTCCTGACAGCAGGTG
3' ss Score
4.13
Exon sequences
Seq C1 exon
GCCCGTGGAGGATGTGAAAGTGTCGGGTGTGCACTGGAGCTACGAGGAGACCAAGACTTTCCTGGCGATTTTGAGCGAGTCGCCTTTTTCTGAAAAGCTCCGGACTTGTCACCAGAACCGCCAGGTGTACCGAGCCATCGCAGAACGGCTGAGGGCACGGGGCTTCCTACGGACGCTGGAGCAGTGTCGCTACAGGGTCAAGAACCTGCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCGCCGGGGACCTGCCCCTTCTACGAGGAGCTGGAGGCCCTGGTTAGGGCTCGGACAGCCATCAGAGCCTCGGACGGCCCAGGAGAGACTGTGGCTCTCCCCCGGCTAGGGGACAGTGACATGGAGGTGGATGAGCAGGAAGAAGGGGGCTGGGAGCCAGAGGAAACGGCAGACGACTGTAATGGTGATGACGTGGCCACCGAGTCCATCCAGGGGCCTGGGATCCCAGGGGGCCCAGCTCTGCTCCAGAGTCGTATTG
Seq A exon
NA
Seq C2 exon
GTGTGCACTGGGGCTACGAGGAGACCAAGGCCTTCCTGACCATTCTCAGTGAGTCCCCATTCTCTGAGAAGCTTCGCACCTGTCACCAGAACAGCCAGGTGTACCGGGCCATTGCAGAGCGGCTGTGTGCACAGGGCTTCCTGAGGACCCTGGAGCAGTGTCGTTACAGATTCAAAAACCTCCTTCGAAGCTACCGAAAAGCCAAGAGCAGCCACCCACCTGGGACCTGCCCCTTCTATGAGGAGCTGGACTCGCTGATGAGGGCTAGGACTGCGGTTAGAGACATGGGGACCGGCGGGGAGGCAGCAGGTCTCCCTACTTCTGATCAGAGCAGTACCGAGGTTGTCAGCCAGGAGGCTTGGGATGAGATGGCAGGTGAAGATGTCATCAGACCTCCAACCCCAAGTCCTAAAACCTCAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.368
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.6)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=59.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGTGATGACGTGGCCAC
R:
GTCTCCTCGTAGCCCCAGTG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development