BtaALTD0000043-2/2 @ bosTau6
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33601282-33603418:-
Coord C1 exon
chr19:33603297-33603418
Coord A exon
chr19:33603260-33603296
Coord C2 exon
chr19:33601282-33601481
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCATGTTGCTTTGGTTCCAGGAT
3' ss Score
7.45
Exon sequences
Seq C1 exon
GGAGGTTCTCCACGTGGCCCTTCTCTTCCTCCGGGTCATCAGTGCTTGTGCCGATGGCAAGATCCGCATTTACAATTTCCTCAACGGGAACTGTCTGAAGGTGATGAAAGCCAATGGCAGAG
Seq A exon
GTGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAG
Seq C2 exon
GATGGTGATCAACACGGAGAGCAACGTCCTCCTGTTTCAGTTTGAGAATATCAAGTGGCAGTACTCAGTGGAACGGGCCAAACAAAAGAAGAAGGACAGAGAGGAGGACAGGGAAGAAAACAGCTTTGCAGAAGTCCTCTCCAAGTCTAGCACCCAGTTCTACAGCCCAAGGGATTCTGTGTCCAGCAAGCAGACAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-25-23,26-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTCCGGGTCATCAGT
R:
ACGTTGCTCTCCGTGTTGATC
Band lengths:
127-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development