BtaALTD0000102-1/2 @ bosTau6
Alternative 5'ss
Description
NA
Coordinates
chr16:77491582-77492392:-
Coord C1 exon
chr16:77492361-77492392
Coord A exon
NA
Coord C2 exon
chr16:77491582-77491642
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCTGTACGT
5' ss Score
5.68
3' ss Seq
TGTCTCCTGATTTCTCGTAGTTA
3' ss Score
6.73
Exon sequences
Seq C1 exon
GTGCAGGATACATCGTGCTCGTCATTGTTGCT
Seq A exon
NA
Seq C2 exon
TTATTGGCGTTGGATTATTGCTCTGCCTGTACTGCTGTTTTTGCAGACAGAGGAAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397-17-16,18-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0248011=Herpes_gE=FE(24.7=100),PF041569=IncA=FE(33.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATACATCGTGCTCGTCA
R:
CCTTTCTTCCTCTGTCTGCAA
Band lengths:
90-94
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development