BtaALTD0000113-2/2 @ bosTau6
Alternative 5'ss
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:1981042-1997717:+
Coord C1 exon
chr25:1981042-1981142
Coord A exon
chr25:1981143-1981146
Coord C2 exon
chr25:1997594-1997717
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CTTGCTTTTTCTGTTTTCAGATA
3' ss Score
11.86
Exon sequences
Seq C1 exon
GCGCGCGCGTGCGCAGACGCGCCGGCGCCGGGGCGCGCGGCGAGCTGAGGAGAAAGCTGCGCGGCGGGCGGAGGTGGGCTCGCGGCCGGCGCCGCAGGAGG
Seq A exon
GTAG
Seq C2 exon
ATAAATGTTCTTGATGCAAGCAAAACAGGAATGCTCTGATCATTTACCGAAGATCACCGAGGCAAACAAACCTTTGTGAGATCTCCAGACAGTGTACCATCCCAGGCAGAAAGGTTAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458-1-0,2-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGCTGAGGAGAAAGC
R:
AGCATTCCTGTTTTGCTTGCA
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development