BtaALTD0000149-2/2 @ bosTau6
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP09]
Coordinates
chr23:27158571-27159250:+
Coord C1 exon
chr23:27158571-27158714
Coord A exon
chr23:27158715-27158780
Coord C2 exon
chr23:27159161-27159250
Length
66 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
GACTCCCATCATCTTCCCAGACC
3' ss Score
5.94
Exon sequences
Seq C1 exon
GTGAGCGTCCACGTGTCCCCAGTGGAGGGGCTGTGCCTGGCCGGGGGTGGAGGGCTCGCCCAGCAGGTGCAGGTGCCCGCGGGCTCTGCCCGGCCCGTTGGCTTCTCTGTGGTGCCCATCGCAGCTGCTGCCGTGTCCCTGAAG
Seq A exon
GTGATGGCTCGAGGATCCTTTGATTTCCCTGTGGGGGACACAATATCTAAGATTCTACAAGTCGAG
Seq C2 exon
ACCCCCGAGGCTGGACCTTGGAAATTCCTGGCAACTCTGATCCCAATATTATCCCTGAAGGAGATTTCAAGAGTTTCGTCAGAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006864-26-30,27-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.5=5.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTCCCCAGTGGAGG
R:
TGGGATCAGAGTTGCCAGGAA
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development