BtaALTD0000373-2/2 @ bosTau6
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112133768-112134102:+
Coord C1 exon
chr8:112133768-112133813
Coord A exon
chr8:112133814-112133853
Coord C2 exon
chr8:112134053-112134102
Length
40 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
TTTTTTTTTTTCTTTTACAGTTA
3' ss Score
12.29
Exon sequences
Seq C1 exon
ATACTATTGGAATGGAGAAATAGAAGAAGCCACTGAGGTCCTGTTG
Seq A exon
GTGAGTGAAGCTGGAGGGATGGGGCCTTAATTGGGAAAGA
Seq C2 exon
TTAATAAAGACAAAGACTTCCAAGATCCATATGCTTTCCAGCTACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957-11-6,12-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
NA
C2:
PF0309110=CutA1=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGAATGGAGAAATAGAAGAAGC
R:
CTGATGTAGCTGGAAAGCATATGGA
Band lengths:
92-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development