BtaALTD0000476-2/2 @ bosTau6
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44328331-44329856:+
Coord C1 exon
chr22:44328331-44328572
Coord A exon
chr22:44328573-44328958
Coord C2 exon
chr22:44329709-44329856
Length
386 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GCCTTTGATTGGTCTCCTAGATG
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTAGTGGCTCCTAAGAAAGCCCGCTTAACAGAAGCTCAGAAGTCCTTAGCTGAGACAATGGAGCTTTTGAATCAGAAGAGAGAAGAACTAGCAGAAGTAGAACATCATTTGGAAAATTTAGAAAGAATATTTCTTGAGAAAACTGAGGAAAAAGCTCGTTTAGAAGACCAGGTGGAACTTTGTGCTAAGAAACTTGAAAGAGCCTCAAAACTAATTGGAGGACTAGGTGGAGAAAAATCGAG
Seq A exon
GTCAGATTTCTACTCATTTTAACAATGTTTTAAAATGTCTGGCTTGACTGTGCAGCTCTCTTTGGGTATTATGATTGCCATGCCATGCCATGCTCAGTCACTTCAGTCGTATCTGACTCTTTGTGACCTCATAGACTGTAGCCTGCCAGGCTTCTCTGTCCATGGTATTTTTCCAGGCAAGAATACTGGAGTGAGTTGTTTATTTTGATTACTGATTTTTAAATGGCTGGTTGAGAATATGGGACTTTCTATAAAGCACCTGGCTAGGCTTCTCCTAACAGAATTTCAGTGTCAAGGATGGTGTTTGCAACTTGCTTTCAAATGTGAAAAGAGAGAGAGAAAGAGAAAGAGGCAAATAAGGCTTAAGACAAGTTTTAATCTTAGTG
Seq C2 exon
ATGGTCTCAAGCTGCAGATGACCTTCAGATAGTATATGAAAATTTGACTGGTGATGTCTTAATATCAGCAGGAGTAATAGCCTACCTTGGTGCTTTCACTTCTGGCTTTCGACAAACATGTACAGAAGATTGGAGCATGTTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-54-52,55-52-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(22.9=100)
A:
NA
C2:
PF127772=MT=PD(13.1=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTAAGAAAGCCCGCTTA
R:
AGCCAGAAGTGAAAGCACCAA
Band lengths:
343-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development