BtaALTD0000591-3/3 @ bosTau6
Alternative 5'ss
Description
Bos taurus zinc finger protein 582 (ZNF582), mRNA. [Source:RefSeq mRNA;Acc:NM_001105026]
Coordinates
chr18:63941332-63943440:+
Coord C1 exon
chr18:63941332-63941432
Coord A exon
chr18:63941433-63941721
Coord C2 exon
chr18:63943352-63943440
Length
289 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
GATTGCTCTTTCCCCCCCAGGTC
3' ss Score
12.07
Exon sequences
Seq C1 exon
GACTACGTTTCCCAGAACACACTGCGGCGCCTGTCCAACCGCGACGCAGCCTCGGCAGTGCTTTGTGCGTCTGCGCCATCTTCCGGCTCCTGAGGCCACTG
Seq A exon
GTACGGACGGGGAAGCGCACCCGGGGCTGCGGGGGGCGCGGCCGAGGGGGCACCTGGACCAGAGGAGCTGGCAGGTGAGGGGCTCCGGAGCTTACCAGGAGCCCCGGGGTCTGCGCCCAAGTGGGCGCTGCGGCCGGGCGGGTCACGGGCCTGGAAAGAACGGGAACGTCTCGTTTCGCCGTCGGTCTGCGGCTTTCCGGGCTCCGGACTACACTCCCCATCGGCCCCCGCGGCGCGCCCTGCTGTCGCCCCCTGTTGCCGTCAGGGCTCATAGCCCGGGACCCCTTAG
Seq C2 exon
GTCTGTCATCTCAGGACTCTGCCCTTCCCCAAGAGACAAACCAAGAGGAGGCCGCAGCAGCCCATGAAATCCTGACAGTCATGTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030348-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTTTCCCAGAACACACTGC
R:
ATGACTGTCAGGATTTCATGGGC
Band lengths:
180-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development