BtaALTD0000592-1/2 @ bosTau6
Alternative 5'ss
Description
Bos taurus zinc finger protein 582 (ZNF582), mRNA. [Source:RefSeq mRNA;Acc:NM_001105026]
Coordinates
chr18:63943352-63945003:+
Coord C1 exon
chr18:63943352-63943440
Coord A exon
NA
Coord C2 exon
chr18:63944877-63945003
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
ATACCTGCCTGTTGTTCCAGGGG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTGTCATCTCAGGACTCTGCCCTTCCCCAAGAGACAAACCAAGAGGAGGCCGCAGCAGCCCATGAAATCCTGACAGTCATGTCCCTC
Seq A exon
NA
Seq C2 exon
GGGTCAGACTTATTCAGGGATGTGGCCGTAGTCTTCTCCCAAGAAGAATGGGAACAGCTGGCACCCACTCAGAGGGACTTGTACAGAGACGTGATGTTGGAGACCTATAGCAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030348-4-3,5-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCAGGACTCTGCCCTTCC
R:
ACTACGGCCACATCCCTGAAT
Band lengths:
114-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development