BtaALTD0000677-1/2 @ bosTau6
Alternative 5'ss
Description
NA
Coordinates
chr22:16470178-16475514:+
Coord C1 exon
chr22:16470178-16470278
Coord A exon
NA
Coord C2 exon
chr22:16475036-16475514
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TTTAACAGTGATTTCTTTAGGTC
3' ss Score
6.44
Exon sequences
Seq C1 exon
GAACCATAGAGATGTGGCTTCCTAGAGAGCCGAAGCTGGGAGGTGGTGTGAGCAACCGGATGTTGCGATACCCGCGGGTCAGCCATTATTCTGGGCTTCAG
Seq A exon
NA
Seq C2 exon
GTCTTACAGATGATGTTCTTCGAACTCTAAGGAAAAAGTCAAGCAAGGATTGAGGGACCCTGGAGAGGAACCTGTCTTAAATGGCAACAATGACAAGAGAAAATTGGGCCCACAATGCTCTGCGACAAGAGGGCCTTGTTAAAGGGAAGGATGATACCTGGAAGTGGGGAACCAGCTTCCAAGGGAGTAGCTCCACTGTTTGGGAGACCTCCCACCTGCACTTTAGACAGTTACGTTATCATGAGACATCTGGACCCCAGGAGGCACTGAGCCGGCTCCGGGAGCTCTGTCGCCGGTGGCTGAGGCCGGAAGCACGCACCAAGGCCCAGATCTTGGAGCTACTGGTGCTGGAGCAATTCCTGAGCATCCTGCCTGGAGAGATACGGACCTGGGTGCAGATCCATCGGCCCGGGAGTGGTGAGGAGGCCGTGGCCCTGGTAGAAGAGCTGCAGAAAGACCTTGATGGACCAACATTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037803-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGCTTCCTAGAGAGCCG
R:
AAGACAGGTTCCTCTCCAGGG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development