BtaALTD0000905-2/2 @ bosTau6
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50420455-50422133:-
Coord C1 exon
chr18:50421977-50422133
Coord A exon
chr18:50421973-50421976
Coord C2 exon
chr18:50420455-50420631
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTCCCCTCCCCATCCTCAGCTC
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCGCCTTCATCGATCCCACCTTCTTCCTGAGCCGAACGGTCTCCAATGTCATCAGCTCCATTGTCTTCGGGGACCGCTTTGACTACGAGGACAAAGAGTTCTTGTCACTACTGCGAATGATGCTGGGAAGCTTCCAGTTCACCGCTACGTCTACCGG
Seq A exon
GCAG
Seq C2 exon
CTCTACGAGATGTTCTACTCAGTGATGAAATATCTGCCAGGGCCACAGCAACAGGCCTTTAAGGAGCTGCAGGGACTGGAGGACTTCATAGCCAAGAAGGTGGAACAAAACCAGCGCACGCTGGACCCCAACTCCCCACGGGACTTCATCGACTCCTTCCTCATCCGCATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815-5-7,6-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.1=100)
A:
NA
C2:
PF0006717=p450=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGTTCACCGCTACGTC
R:
GCTCCTTAAAGGCCTGTTGCT
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development