BtaALTD0000933-2/2 @ bosTau6
Alternative 5'ss
Description
Bos taurus dipeptidyl-peptidase 4 (DPP4), mRNA. [Source:RefSeq mRNA;Acc:NM_174039]
Coordinates
chr2:34527921-34529802:-
Coord C1 exon
chr2:34529681-34529802
Coord A exon
chr2:34529456-34529680
Coord C2 exon
chr2:34527921-34527968
Length
225 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TTCCCTGATTATTTTAACAGGTC
3' ss Score
9.02
Exon sequences
Seq C1 exon
AATCCAACTTAATGACTACACAAAAGTGACGTGCCTCAGCTGTGAGCTGAATCCAGACAGGTGTCAGTATTACTCTGTATCGTTCAGTCAAGAGGCAAAGTACTATCAGCTGAGATGTTCCG
Seq A exon
GTAAGTTTGAGCAGAGGGTACCCACAAAGTCCCTCTCAAGTCACTCCCTCCATCCCCTCCCCTCTCTGGACAACCTTCTCACCACCCTCCTGGCTCAGCATCTCCATCCCTGAAACCTCCTTTTCAGTGTCCAGTTTAGGAAATATTTTTCTGCCTTGATCACTTCTCTCCTATTGAATCTGAATGCATGAAATCACATAAGTCCTTTTCCCTTTCCACTCACGG
Seq C2 exon
GTCCCGGTCTGCCCCTCTATACTCTGCATAACAGCAACAATGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048246-9-7,10-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.7=100)
A:
NA
C2:
PF0093016=DPPIV_N=PD(1.8=29.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACTTAATGACTACACAAAAGTG
R:
TGCAGAGTATAGAGGGGCAGAC
Band lengths:
148-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development