BtaALTD0001348-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011215 | ACTN4
Description
Bos taurus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001098052]
Coordinates
chr18:48740173-48740922:+
Coord C1 exon
chr18:48740173-48740183
Coord A exon
NA
Coord C2 exon
chr18:48740764-48740922
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
CCGCCCACCCCCCCTCGCAGGGC
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATACAGCCTG
Seq A exon
NA
Seq C2 exon
GGCGATGCCGAGTTCAACCGCATCATGAGCGTAGTGGACCCCAACCACAGCGGCCTCGTGACCTTCCAAGCCTTCATCGACTTCATGTCGAGGGAGACCACCGACACAGACACGGCCGACCAGGTCATCGCCTCCTTCAAGGTCCTGGCTGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011215-40-33,41-33-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.057
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development