BtaALTD0002321-4/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000001915 | APOH
Description
Bos taurus apolipoprotein H (beta-2-glycoprotein I) (APOH), mRNA. [Source:RefSeq mRNA;Acc:NM_173992]
Coordinates
chr19:63242180-63243060:-
Coord C1 exon
chr19:63242960-63243060
Coord A exon
chr19:63242461-63242959
Coord C2 exon
chr19:63242180-63242356
Length
499 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGCTTTGTGTTCTGTTTCAGCCT
3' ss Score
10.31
Exon sequences
Seq C1 exon
AAAGCCGCTCTGGCAGCGCCGGCGTGACCCACCCGCCATGCTCCCCCCAGCGCTCGTCTTGCTGTTGGGGTTTCTCTGCCACGTTGCTATCGCAGGACGAA
Seq A exon
GTGAGTACTCATGGCTTTTGAAAAAAAAAAAAGCATATCCAGTCCTGGGCTTCCCAGGGGACACTAGTGGTAAGGAACCTGCCTGCTGACGCAGGAGACGAGGGCTCGATCCCTGGGGCGGGAAGATCCCCTGGAGAAGGAAGTGACAGCCCACTACAGTGTTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTGGGCTATAGTTCATGCAGTCACAGCGTCGGACGTGACTGAGCACACACCCAACCCTCTGGTAAATGCCAGGGGCCCATAGGGATTAGCTAAATTCTCTTCAGGGCGGATGCTGGGGAGACTGGATTGGTGCTTATTGTTTGATGAAGCCATGCTTAAACTCCTCAGCGAGATACTTAGCTCCTTTAAGCCTCAGTATACTGGCCTGGCAAATGGGGATAACACACCTAGCCCCCTTTAAAAGCTGATGAGGAGCTTAGCTGGGGTACGGCACACATCAAGTATTTGTAGCAAAACTCAGG
Seq C2 exon
CCTGCCCCAAGCCAGATGAGCTACCGTTTTCCACGGTGGTTCCACTGAAACGGACCTATGAGCCCGGGGAGCAGATAGTCTTCTCCTGCCAGCCGGGCTACGTGTCCCGGGGAGGGATCCGGCGGTTTACATGCCCGCTCACAGGACTCTGGCCCATCAACACGCTGAAATGCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001915-1-0,2-0,3-0,4-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=PU(93.5=96.7),PF0008415=Sushi=PU(3.4=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCGCTCGTCTTGCT
R:
TGCATTTCAGCGTGTTGATGG
Band lengths:
230-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development