BtaALTD0003214-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003245 | BCAR3
Description
Bos taurus breast cancer anti-estrogen resistance 3 (BCAR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001024483]
Coordinates
chr3:49942256-49951939:+
Coord C1 exon
chr3:49942256-49943205
Coord A exon
chr3:49943206-49943253
Coord C2 exon
chr3:49951612-49951939
Length
48 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CTCTCTTCTTTTCCCCTTAGACT
3' ss Score
11.48
Exon sequences
Seq C1 exon
GAAAGTGAAAAGTGAAAGTGAAGTCTTCGTGACCCATGGACTGCAGTCTACCAGGCTCCTCCGTCCACGGGATTTCAAGAGTAGTGGAGTGGGGTGCCATTGCCTTCCCCGTCTATCCTTGCTACCAATTACTCTTTCTATAGCTTTATAACAGGTCTTGATAACTGGTAGTCCTCCACTAGGCTCTAATTTTTTACCCTCCCAAGCCATCTAATACCAGAGTGCAGCTTCCACTTCCCACTTGGCTGTTAGTATCTTCAGATGGGTGTAATTGATTTGCTTGTTCCAAGGGCTTGGTCATTTGTGGTTACCTGGGTCTTTATCCCATCAAAACCCCTTTAAACAAAGCCAGCCAGGTGTCGGCAGACAAGCAAATCAGATCTGTTGGGTAATTAAATTACGCGGGGAGGGGAGAGGTGGATAAAGTGAGGTTGTCTCCCCTGGGGGTAGAGTGACAAGGTGATCGATCTACATACACCTGAGGACTGGCTTCTCAGGAG
Seq A exon
GTACGAGGAGAGCCAAACTAAAATCCGGGTAGAGGAGGACTACGCGAG
Seq C2 exon
ACTTGAGGATCATGGCTGCGGGAAAGTTTGCAAGTCTTCCCAGAAACATGCCAGTGAATCACCAGTTCCCCCTCGCCTCGTCCATGGACCTTCTGAGCAGCAAGTCCCCTCTCGTTGAGCGTCGTGCAGATGCCTATCAAGACGTGTCTATACATGGCACCCTTCCCCGGAAGAAGAAAGGCCCTCCTCCCATCAGGTCCTGTGATAACTTCAGTCATGTGGGGACCCTCCCCCATTCCAGATCCCCACGGCACCACTCACCTCTGATCCAGGATGTCATCCAGGAGCAGCCCCTGCAAGACTGGAAAGGCGAAGCCTTCACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003245-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.525
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAATTACGCGGGGAGGGGA
R:
AGACTTGCAAACTTTCCCGCA
Band lengths:
145-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development