BtaALTD0004068-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46558891-46562231:-
Coord C1 exon
chr22:46562169-46562231
Coord A exon
NA
Coord C2 exon
chr22:46558891-46558961
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCGTCTTTTCTTCCCCACAGACT
3' ss Score
12.11
Exon sequences
Seq C1 exon
ACTGTAAATTGTTACCTCATAGACAATAATGGATTTATTCTGGTATCTGAAGACTACACTCAG
Seq A exon
NA
Seq C2 exon
ACTGGAGACTTTTTTGGTGAGGTGGAGGGAGCTGTGATGAACAAATTGTTAACAATGGGCTCCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-29-26,30-26-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTATTCTGGTATCTGAAGACT
R:
AGGAGCCCATTGTTAACAATTTGT
Band lengths:
98-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development