BtaALTD0004359-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000036101 | CCBL1
Description
Bos taurus cysteine conjugate-beta lyase, cytoplasmic (CCBL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077978]
Coordinates
chr11:99383043-99384152:-
Coord C1 exon
chr11:99384119-99384152
Coord A exon
NA
Coord C2 exon
chr11:99383043-99383088
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
TCCCCCAACTCCTTCTCCAGGGT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GGCGGAGCGCGCGAGGAAGCGGCCCTGTGGTTCG
Seq A exon
NA
Seq C2 exon
GGTGAACATGGCCAAAGAGTAGAGTGGCGGAAGTGGAAGCAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000036101-1-4,2-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development