BtaALTD0005027-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62661045-62665464:+
Coord C1 exon
chr16:62661045-62661124
Coord A exon
chr16:62661125-62661158
Coord C2 exon
chr16:62665318-62665464
Length
34 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATATATCTTTTCTTTTTTAGGTA
3' ss Score
11.99
Exon sequences
Seq C1 exon
ATGATAGCTCTATGAAAGAAAAACCAGCTGAAAAAAGTAGAGAGAAGAAAGTGGTCAAGCCAGTACGAAAAGTCCAAAAG
Seq A exon
GTAGCACAGTTATCAAGTTCAGAATGTAAAACAG
Seq C2 exon
GTAGCAGTCATCTGATTAGTACATCGTCTTGGCGAGATGGACAAAAATTAGTAAAGAAAATTCTTGGTCCTGCACCTAGAATAGAGCAAAAAGAGCGAAGAGCAGCATCAAGTGACAGAAGTGGAAGAGAAAGAACTACTAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-8-10,9-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAAGCCAGTACGAAAAGT
R:
GCTCTATTCTAGGTGCAGGACC
Band lengths:
116-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development