BtaALTD0005346-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57878736-57886409:+
Coord C1 exon
chr17:57878736-57885301
Coord A exon
chr17:57885302-57885464
Coord C2 exon
chr17:57886226-57886409
Length
163 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTTGTTTTTTCTTTAACCAGCTC
3' ss Score
7.55
Exon sequences
Seq C1 exon
TGCACCTGAAACCCTGAGAATGTCCTTTTTGCATTTCCTGGCAGCTGCCAGACCTCCTCATTCTGGCTTCATCTCCTCCTCACTCCACATCCCTTCACTACTCCATCTCCTTCCCGATGCTGCCTGCTGCTTCCCATGTTGTTGTTGTCACTGGGGAACTTTGGAAACAGCCAGATTCTTTGGAGTCTGTAAGTGGAAAACAGACTGCTGCTCCTATCTGGCACTAAGCTTTGTCTAGAAAACAAGGAGTTAAAAAGCAGCCTGGTCCAGGGAAGGGCTGTGACAGCTGTCCTAGGGGGCGCTCTTGAGAGCTCTGGCCTGACTCATGCTGCTCTGTCACTCAGATCAGCATTGGCCCCTGCCACGCAGGCAGCCAGGTGGGGTTACTGCCAGAGCACGCACAGAGCGGGGAGCATGAAGCCTGCACTGCGGGGGATGTGATGCCCAGCTCGCCTGCTCACCCAGCCTGCCTACCACAGACGCTTCAGCCTGCAGCCATG
Seq A exon
GTAACACTTCTGGCCGGCTGCACCCCCGGGAGCCCACCACAATGGGCAGCCTCCTGGTGACTGATGGACCAGTGTCCACCTCCCCGACTGAGAGAGCTTAGTAGGTCCGCAGGAGGCGGAGAAGATGTAGGACATTCCTAGCTGGGAATCATGCCTTAACGAG
Seq C2 exon
CTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGATGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCTGAACCCCTCAGGTTTCTCGGGCGAAGAACTGCCGTTTGTGGGGTTTTCGTATAGCAAGGCACTGGGAATTCTTGGTAGATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963-18-14,19-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.274
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043319=Pkinase_C=WD(100=75.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGATCAGCATTGGCCC
R:
CACGGAGAGGATGAAACCCAC
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development