BtaALTD0005441-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34448306-34452187:-
Coord C1 exon
chr21:34452087-34452187
Coord A exon
chr21:34452044-34452086
Coord C2 exon
chr21:34448306-34448457
Length
43 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTTCTGTTTCTGCGGCCTAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
CGCGAGGGGCGGGGCTGCCACGGGCGGAGGCCGGAGCCGGAAGCGGAAGAGGCGCTCGGAGCGGGGAGTGGGGCCTAGCAGCAGCCTGAGCCTGGGAGACC
Seq A exon
GTGAGTGTGGGGCCCGGGCCCGCGACGGGAGCAGTGGCGGGCG
Seq C2 exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAGCCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCTTACAGTCGGGAGCACGAAGGGAGATTGCGATACCCGTCTCGAAGGGAGCCGCCGCCACGGAGATCTCGGTCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.608
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCAGCAGCCTGAGCCT
R:
TCGAGACGGGTATCGCAATCT
Band lengths:
144-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development