BtaALTD0005633-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021844 | COCH
Description
Bos taurus coagulation factor C homolog, cochlin (Limulus polyphemus) (COCH), mRNA. [Source:RefSeq mRNA;Acc:NM_001077842]
Coordinates
chr21:41947958-41948479:+
Coord C1 exon
chr21:41947958-41948058
Coord A exon
NA
Coord C2 exon
chr21:41948419-41948479
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
GCATTCTCCGTCTCTCCCAGGTC
3' ss Score
10.21
Exon sequences
Seq C1 exon
GCGCGCCCCCCGCACAGTGCTCATGCGCGCAGCGCAGCCTTTATAGCCGCGCGGGAGCCGCGCTTTCCGCACTCGGGCGCAGCCGGGCGGTTCCGACTCAG
Seq A exon
NA
Seq C2 exon
GTCCGAGTAGCCCCTCTTCCACCAACCATGTGGGCATCCTGGATTCCGGTTCTCTGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021844-1-0,2-0,3-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGCACAGTGCTCATG
R:
GAATCCAGGATGCCCACATGG
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development