BtaALTD0006834-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147943251-147945788:+
Coord C1 exon
chr1:147943251-147943374
Coord A exon
chr1:147943375-147943378
Coord C2 exon
chr1:147945674-147945788
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CGCTTCCCTTCCTCCCCCAGGAT
3' ss Score
12.15
Exon sequences
Seq C1 exon
GATGACCTGGTCTTCGTCGTGGGCAAGCTGGACGGGCTGATGGTGGTGGGATTTCGCAGACACAACGCGGATGACGTGGTGGCCACTGCGCTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAG
Seq A exon
GCAG
Seq C2 exon
GATTGCAGTGTTCTCCGTGACAGTGCTCCATGACGACCGGATTGTGCTGGTGGCAGAGCAGCGGCCTGACGCCTCCGAGGAGGACAGCTTCCAGTGGATGAGCCGCGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-21-32,22-32,23-32-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGATTTCGCAGACACAA
R:
CTGTCACGGAGAACACTGCAA
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development