Special

BtaALTD0006835-2/2 @ bosTau6

Alternative 5'ss

Gene
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29409295-29412811:-
Coord C1 exon
chr5:29412692-29412811
Coord A exon
chr5:29412689-29412691
Coord C2 exon
chr5:29409295-29409492
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAGTGGTA
5' ss Score
-19.76
3' ss Seq
GGGGTGTTTTTTTGGTACAGTAC
3' ss Score
4.66
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGAGTATCCACAAAAATCCAGCAGCTTCTCAACACTCTGAAACGACCCAAAAGGCCTCCCTTAAAAGAATTTTTTGTGGATGATTCTGAAGAAATTGTGGAAG
Seq A exon
GTA
Seq C2 exon
TACCTCAGCCAGACCCTAACCAACCCAAGCCTGAGGGACGGCAGATGACCCCTGTGAAGGGAGAACCACTAGGAGTCATCTGTAACTGGCCCCCTGCTCTGGAGTCTGCCCTGCAGCGCTGGGGCACTACTCAGGCAAAATGCCCCTGTCTGACCGCACTGGATGTAACGGGGAAGCCAGTTTACACTCTTACTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-10-11,11-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.732 A=NA C2=0.284
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACGACCCAAAAGGCCTC
R:
GCTTGGGTTGGTTAGGGTCTG
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development