BtaALTD0006920-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021458 | DLX6
Description
distal-less homeobox 6 [Source:HGNC Symbol;Acc:HGNC:2919]
Coordinates
chr4:14277314-14278954:+
Coord C1 exon
chr4:14277314-14277506
Coord A exon
chr4:14277507-14277845
Coord C2 exon
chr4:14278761-14278954
Length
339 bp
Sequences
Splice sites
5' ss Seq
AGGGTCTGT
5' ss Score
2.7
3' ss Seq
TCTGAATCCTTTGCTTGCAGATC
3' ss Score
8.02
Exon sequences
Seq C1 exon
NCGGCGGCCGGCTCGCACCACCACCACCACCAGCACCACCACCACGGCTCGCCCTACGCGTCGGGCGGCGGCAACTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCGGCCGCCCAGACGCGAGGGGACGACACAG
Seq A exon
GTGAGAGGCCGCTGGGGCAGCTCGCTTCTCCCGCCTCCCGGCTGCCCCCCACCCCGCCCGCCCGCCCCGCTCACTTCCTCAATGCCCAGGCCTCCGCCGGCCCCCTCCCCCAGGCGGCCCGGCGCGCCCCCGGCCAGGCCTGGTGCGCGCCCGCTTGCCTGGCGCCTGCCTGCCGGCCTCGCAGGGCCGGGCCCCTTCGCGCCGCCCCGGACCCTAGGCTTCCCTGCGGCTCGACCCGCCTCGCTCCCTCGTCTCCGGCGCGTCGCTCGGGCCGCGCCTCCGACTCGGCGCAGGCTTCGCTCGACCAACTGGCCCGCACTGCGCTCTCCAGCCCGCAGG
Seq C2 exon
ATCAACAAAAAACCACAGTGATTGAAAATGGGGAAATCAGGTTCAATGGCAAAGGGAAAAAGATTCGGAAGCCTCGGACCATTTACTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAGCAGACTCAGTACCTGGCGCTTCCCGAGAGAGCTGAACTGGCAGCTTCCTTAGGACTGACACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021458-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.431
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=64.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCACCACCACCAC
R:
AGTCCTAAGGAAGCTGCCAGT
Band lengths:
347-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development