BtaALTD0006962-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30498914-30499865:+
Coord C1 exon
chr4:30498914-30499012
Coord A exon
chr4:30499013-30499036
Coord C2 exon
chr4:30499743-30499865
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGTG
5' ss Score
-1.76
3' ss Seq
TAAATGCTGTTGATGTCTAGGTT
3' ss Score
4.87
Exon sequences
Seq C1 exon
GTCAAATTTTCCATAAACGAAGCCACAACTTTGGCAGATCTGTTAGCCTTGCAGTTACACCAAGTGGAAGAGGCTGTCCGAAGCATCGTGGACAAAGCA
Seq A exon
GTGAGAGAGCTGGGGACTGAGAAG
Seq C2 exon
GTTATTACTGAAATCAGCCGGACCTGGGCAACCATGGAGTTCTCTTACGAAGTTCACTATCGGACAGGCATTCCATTACTGAAGTTTGATGAACTATTGTTTGAAACTCTAGAGCACAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-32-31,33-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(13.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATCTGTTAGCCTTGCA
R:
GAGAACTCCATGGTTGCCCAG
Band lengths:
111-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development