BtaALTD0007305-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000027134 | DYNC1I1
Description
Bos taurus dynein, cytoplasmic 1, intermediate chain 1 (DYNC1I1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046516]
Coordinates
chr4:12944903-12989079:+
Coord C1 exon
chr4:12944903-12945003
Coord A exon
NA
Coord C2 exon
chr4:12988963-12989079
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTTCTTCTTTTGCTCCAAGGAA
3' ss Score
7.9
Exon sequences
Seq C1 exon
ACAGCACATCCTGCGCGCGCCCGGCCCGCCGCCCTCGGGAAACGCTCGGGCGCCGCCGCCGCCGCGCTCGCTAGCCCAGTGCCGCCGCCGCCCGCGTGCAG
Seq A exon
NA
Seq C2 exon
GAAACCAACATGTCTGACAAAAGTGACTTAAAAGCTGAGCTAGAGCGCAAAAAACAGCGCTTAGCACAGATAAGAGAAGAGAAGAAACGGAAGGAAGAGGAGAGGAAGAAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027134-3-0,4-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGGGAAACGCTCGG
R:
TTCTTCCTCTCCTCTTCCTTCCG
Band lengths:
180-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development