BtaALTD0008383-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99527804-99532583:+
Coord C1 exon
chr11:99527804-99527904
Coord A exon
NA
Coord C2 exon
chr11:99532347-99532583
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTGGTCATCTGTCTCTCAGCTC
3' ss Score
7.41
Exon sequences
Seq C1 exon
AAGGTTTGCCCAGCGTGAGACCACGCCCCCGGCGGCCCCGAGGTTGGTTGCGCGGGCACCGGGGAAGGAGACGCTGCCCTTCCGCAGCTATGGGATCTTGG
Seq A exon
NA
Seq C2 exon
CTCTGTGCAGGGACCTTCTGGTCTGTGCGTCTCTGTTCTTTTGGGGCGTGGATGGTACCCAGGACCCAGCCAGCAACCCGTTGAAGACGTTCTTGGAAGCTTTCACCCCCGAGGGCTCTCACCCGGGCCGCTGATCCTGCCATGGCGTTCCGGCGGACCGAGGGCATGTCCATGATACAGGCCCTGGCCATGACAGTGGCTGAGATCCCTGTGTTCCTTTACACGACGTTCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653-1-0,2-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.4=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCCCAGCGTGAGACC
R:
AGGGATCTCAGCCACTGTCAT
Band lengths:
308-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development