BtaALTD0008426-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34336044-34342634:+
Coord C1 exon
chr2:34336044-34336083
Coord A exon
chr2:34336084-34336088
Coord C2 exon
chr2:34342530-34342634
Length
5 bp
Sequences
Splice sites
5' ss Seq
GGAGTATGA
5' ss Score
0.37
3' ss Seq
CCTCTGTTCATTTCTTTCAGTTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
ACCCAGGAGCATATAGAAGAAAGCAGAACTGGATGGGCTG
Seq A exon
GTGGA
Seq C2 exon
TTCTTTGTTTCAACACCAGTGTTCAGCCATGATACCATTTCATACTACAAAATATTTAGTGACAAGGATGGCTACAAACATATTCACTATATCAGAGACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140-14-13,15-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.8=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGAACTGGATGGGCTG
R:
TGTTTGTAGCCATCCTTGTCACT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development