BtaALTD0008451-3/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26740770-26742945:+
Coord C1 exon
chr2:26740770-26740870
Coord A exon
chr2:26740871-26741040
Coord C2 exon
chr2:26742426-26742945
Length
170 bp
Sequences
Splice sites
5' ss Seq
CGGGTATCT
5' ss Score
3.66
3' ss Seq
TTAAATCAATTTCTTTACAGAAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGAATTTGTCCGCGAATCAGGATCGGTGACGGCGATAGGTTTTCTTCTTGTACCCAGCACGTTTCGGTTCCGGGGTACAGAGTTCGGAGGCTTCTTTCCAG
Seq A exon
GTATTGTATTTCCCGGAGCGCGGAGGACTAGGGCAGGGCTGAGCTCTCTCCCAGCGGGACCGGGAGACCACATTCGTTCAGCGCCACTGTGTGCCAAGAGCCGAGGATGCCTGCCATTTTCAAAGGGTGCTGCTGCACTATATACCCTGCACCATACCTGTTCCCGGCGG
Seq C2 exon
AAGCTGCATATTGAGATGGGATTTGGAGTCATCATAATGGAAGCAAAATACATGAAGGAAAACCAGTTATTTTTATACCAGCATATTGCACCTGACTACTAGTTGCAAATGGTTTTCTTTACCTAAGAAAATTTGTGATGTAAATGAAAAGATAGTTTTTGTCCCCTAGATTCATTATTTACAATATGCTTTGCCTAAGGGCTATTCGTCCATTCTCCTCGAGAGTGTTTCACTTTCGACCCTTTAGTTTTGAACCATTAATTAGTCAGATGAATAATTGTACAGATGAAGAGCAAATATTTGGTCTTATTGAAAAAAACAAATCCCTACTCTCAGAAAAGCAAGTGGGATGTGCACTTAGTATGCTTTGGCAGTTTCAAAAGCAGAAGACCAGCTCAGTAAAAAATGTGGACTGTATCAGAAACCATCCCCAATTTCTTACTCTGTGTAATTTAGCCACAACTAAAATGGGATTCATGAGCGACAGTACCTTGGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743-0-0,1-0,2-0,3-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACAGAGTTCGGAGGCTT
R:
ACTCTCGAGGAGAATGGACGA
Band lengths:
255-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development