BtaALTD0008873-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98500132-98503035:+
Coord C1 exon
chr11:98500132-98500196
Coord A exon
chr11:98500197-98500204
Coord C2 exon
chr11:98502921-98503035
Length
8 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GACCCTGGTTCTTTCAACAGCTC
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGCTCCACGTGTGCCTTCACTGAACGTATCCTCCGAAGCTATGGCCTGAAGACGGGGTTCTTTAG
Seq A exon
GTACTGAG
Seq C2 exon
CTCTCCCCACCTGGTGCAGGTGCGTGAGCGGATCCGCATCAATGGGCAGCCCATAAGCTCCGAGCTCTTCACCAAGCACTTCTGGCGCCTCTACCACCGGCTGGAGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994-3-6,4-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(10.1=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCCTGAAGACGGGGTTC
R:
AAGTGCTTGGTGAAGAGCTCG
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development