BtaALTD0009035-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007258 | GAD1
Description
Bos taurus glutamate decarboxylase 1 (brain, 67kDa) (GAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075756]
Coordinates
chr2:25662725-25664281:-
Coord C1 exon
chr2:25664202-25664281
Coord A exon
NA
Coord C2 exon
chr2:25662725-25662837
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
TTTTTTCACCACCTTTCCAGGTT
3' ss Score
9
Exon sequences
Seq C1 exon
GCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGAACCAAAGCATGATTGTGACCTCCAGAG
Seq A exon
NA
Seq C2 exon
GTTTACATATGAAATTGCACCAGTGTTTGTCCTCATGGAGCAAATAACACTTAAGAAGATGAGAGAGATAGTTGGATGGTCAAGTAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007258-15-8,16-8,17-8-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGTGTTGGTTGCTACG
R:
TGAGGACAAACACTGGTGCAA
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development