BtaALTD0009452-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3614702-3615360:+
Coord C1 exon
chr7:3614702-3614784
Coord A exon
chr7:3614785-3614786
Coord C2 exon
chr7:3615285-3615360
Length
2 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
CTGACTCCCTGACTTCCCAGGAC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GGTTACCCCCGCCTCCTGAGAGCAGGAAGAGGTACAGTGACATCTTCCGAAGCCTGGACAACCTCGAGATCTCACTGGGGAAT
Seq A exon
GT
Seq C2 exon
GACTCTTGAGATGCTGGCTGGAGACCCTGTGATTTCAGGAGATCCAGAACCTGACAAGAACCCCACAGCCGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTGGACAACCTCGAGAT
R:
GGGGTTCTTGTCAGGTTCTGG
Band lengths:
98-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development