BtaALTD0010339-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70206063-70207085:+
Coord C1 exon
chr4:70206063-70206135
Coord A exon
NA
Coord C2 exon
chr4:70206746-70207085
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
3' ss Seq
CTTTTTTTTTCCTTTGGCAGGAA
3' ss Score
10.18
Exon sequences
Seq C1 exon
CATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAG
Seq A exon
NA
Seq C2 exon
GAAGGTGTCTTGCTGCAGGTAACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGTTCTTGTTGGTGCCTTCATTTTAAAAAAGCACTCTTTTAAGATTAAAGGGAAATGTTTTCTGATAAAACAGACTTCATTTAGTTACAGGGTCTTAATATAAAACAATTACAAATTGAGTATTGTTTGTAAAAGAGTAAACATCAAGTCAGCTAGAGAGATAAATGTTATCATGTTTTGAATTAGGTTTTGTGAGTAGACAGATTAAAATTCTATTTTAAATATAAAGTTATAAAATAAATACTTTTGTATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726-20-29,21-29,22-29-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTGCCACAAAGACTGT
R:
GGCACCAACAAGAACTACTTTCA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development