BtaALTD0010935-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000009987 | INTB3
Description
Bos taurus integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) (ITGB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206490]
Coordinates
chr19:46998359-47000215:+
Coord C1 exon
chr19:46998359-46998554
Coord A exon
chr19:46998555-46999032
Coord C2 exon
chr19:46999963-47000215
Length
478 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
AATGTCCTTCTGCCTTACAGATG
3' ss Score
10.74
Exon sequences
Seq C1 exon
GCGCTGCCTCCAGGCTCGCCCCGCTGTAACTTGAAGGAGAACCTGCTGAAGGATAACTGCCACCCGGAGTCCATCGAGTTCCCTATCAGCGAGGCCAGAATCCTGGAGGCCAGGCCCCTCAGTGACAAGGGCACTGGAGACAGCTCCCAGATTACCCAAGTCAGTCCCCAGAGGATTGCCCTCCGCCTACGGCCAG
Seq A exon
GTAGGGAGCCTGTGGACGTGGCTCATGAGGAAATTGTGGTGGGAAGAGAAGGATGTCGGGGGAGGTGTGAGCAGGAGAATGGAAGAAAATGGAAGGCTTGGGGACCTGGAGTCCGAAGACTGGAGTTTGAATCTTGACTCTTCCATAGATTAGCTATTTGACCTTGGGAAAGTTAGTTAACCCTGCTAACATTGTGATGTTTAGTTGCTAGGTTGTGTCCCACTCTTTGTGACCCCACGTAGCCCACCAGGCTCCTGTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGATTGCCATAAAAATGCCTGTTTCTTGTTTTCCTCAATGTCTGTTTTATCCAGTACATAGCTTTCTCTTGGGGCTCAAATGATATATAAGATGAGGAAGCAGTTTATAAGCCCCCTTTCCATGTGAGATTGAGGCAAGGCCATGGATAGGGGCAGAGAAAATAGGGGCAGGAGACCTTCAGAGGG
Seq C2 exon
ATGATTCGAAGATTTTCTCCGTCCAAGTTCGGCAGGTGGAAGATTACCCTGTGGACATCTACTACTTAATGGACTTGTCTTACTCCATGAAGGATGACCTGCGGAACATCCAGAACCTGGGTACCAAGCTGGCCTCCCAGATGCGTAAGCTCACCAGTAACCTGCGGATTGGCTTCGGGGCCTTTGTGGACAAGCCCGTGTCACCATACATGTATATTTCTCCACCAGAGGCTATCAGAAACCCTTGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009987-9-5,10-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(15.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGGATAACTGCCACCC
R:
GACACGGGCTTGTCCACAAAG
Band lengths:
354-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development