BtaALTD0011217-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000017493 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr17:29402961-29421877:-
Coord C1 exon
chr17:29421777-29421877
Coord A exon
chr17:29421367-29421776
Coord C2 exon
chr17:29402961-29403038
Length
410 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
GCTGTCTCATTGCTTTGCAGGCT
3' ss Score
9.12
Exon sequences
Seq C1 exon
CCGCCCGCCACTCCGTCCGCCAGCCCGCCACGGCCCAAACTCATGCGGCGCGGAGCGAGCGGCGAGGAGCCCAGCGCCGCGGCCGAACCCCTCCGCAGCAG
Seq A exon
GTACGCGCGCGGGCCGCGGGGGGCGCGCGGGGAGGGCGCGCCGACCGAGAGTCCGCGCGTGTCCGCGTGTGGGTCCGTGTGCGCGTCCTGATTCCGCGGCGGCGGCAGCGGCGGCGGCTGCAGGACGAGCCGAGAGGCTCAGCCATATTTGATGGTTTTGTTGCTTTGCTCGGGAGTTCTCGGGAGTAATTTAATGCCGAAGGTCGCTGCCTAGTGGAAATAATATAGTACGTCATTAATATGGCGCCAAAAGATTGGGTTCTCGATATGTAGCGAAGGAGGGAGGGCCGGCAGCCGCCGAGCGCAGCGTTACTATCCCACCAGTAACTTGGGCATTGCCGGGGCGGGGGCCAGAGGAGGAGGAGGAGAGGATGATTTTTGGATCCTGAGAATTGATGTGTGTTGGATCA
Seq C2 exon
GCTGCCTGCTGTTTCCCGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017493-2-0,3-0,4-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development