BtaALTD0011344-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008710 | KCNH1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RefSeq peptide;Acc:NP_776797]
Coordinates
chr16:74208285-74216257:+
Coord C1 exon
chr16:74208285-74208677
Coord A exon
NA
Coord C2 exon
chr16:74216157-74216257
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
TATGGATCGTAGCCCACCAGGCT
3' ss Score
-2.89
Exon sequences
Seq C1 exon
GTTCTGCAGCTGGGCTCAGACATCCTTCCCCAGTACAAGCAAGAGGCACCAAAGACTCCCCCGCACATCATCTTACACTACTGCGTTTTTAAGACCACGTGGGACTGGATCATCCTGATCCTAACCTTCTACACAGCCATCCTGGTTCCTTACAACGTCTCCTTTAAAACCAGGCAGAACAACGTGGCCTGGCTGGTTGTGGACAGCATCGTGGATGTCATTTTTTTGGTGGACATTGTGCTGAATTTTCACACCACTTTTGTTGGACCCGCTGGGGAGGTGATTTCTGACCCCAAACTCATTCGCATGAACTACCTGAAGACGTGGTTTGTGATTGACCTTCTGTCCTGTTTGCCCTATGACGTCATCAACGCTTTTGAGAACGTGGATGAG
Seq A exon
NA
Seq C2 exon
GCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAATAGGTTGCCACTTCCTACTCCAGGGGATCTTCCCGACCCAAGGATCAAAGCTGCACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008710-7-12,8-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCAAACTCATTCGCA
R:
TGGAGTAGGAAGTGGCAACCT
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development