BtaALTD0011477-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19268917-19269279:+
Coord C1 exon
chr7:19268917-19269021
Coord A exon
chr7:19269022-19269096
Coord C2 exon
chr7:19269202-19269279
Length
75 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTCGGGGCCTGCCCCCACAGGCC
3' ss Score
8.2
Exon sequences
Seq C1 exon
CCGACCCCAACGCCGCCTGGGCCGCCTACTACTCACACTACTACCAGCAGCCCCCAGGCCCTGTGCCCGGCCCGGCACCAGCCCCCGCGGCCCCACCCACCCAGG
Seq A exon
GTGAGCCCCCTCAGCCTCCACCTGCTGGTCAGTCGGACTACACTAAGGCCTGGGAAGAGTATTACAAAAAGATCG
Seq C2 exon
GCCAGCAGCCCCAGCAGCCTGGAGCGCCCCCGCAGCAGGACTACACGAAGGCCTGGGAAGAGTACTACAAGAAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018-18-26,19-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(77.8=30.9)
A:
NA
C2:
PF090055=DUF1897=PD(18.5=18.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCGCCTACTACTCAC
R:
CCTGCTTCTTGTAGTACTCTTCCC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development