BtaALTD0012498-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86188066-86189843:-
Coord C1 exon
chr10:86189562-86189843
Coord A exon
chr10:86189475-86189561
Coord C2 exon
chr10:86188066-86188215
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTCTGACTCCCTCCTCCCAGAGC
3' ss Score
8.84
Exon sequences
Seq C1 exon
AGGTCTACGCTCAGCTCTGCAATGTGGCCCGGATCGAAGCTGAGCGGGAGGCCGGGATCCACTTCCGGCCCGGCTATGAGTACAGCCCGGGGCCGGATGACCTGCACTATAGCCTCTACGGCCCAGACGGGGTCCCCTTCTACAACTACCTGGGCCCCGAGGACGCCATCCCCGAGCCACTCTTCCCCAGCACGGCTGGCCGCCCAGGGGACCGCATACCGCTCCCTGAGCCTCCCCTGCAGCCCTCAGAACTCCAGCCCCACTATGTGGCCAGCCACCCAG
Seq A exon
GTCTGTGTTGCTGCAAAAACGGGGAAGAGGTGGGCTCTGAAGCAGTTTCACTTCCATCTTCTCCATCTGCTCATCACTGTCAGCAGG
Seq C2 exon
AGCACCAGGCTGGCTTCGAAGGGCTCCAGGCAGAGGAGTGCGGCATCCTGAATGGCTGTGAGAATGGCCGCTGCGTGCGCGTGCGCGAGGGCTACACCTGTGACTGCTTCGAGGGCTTCCAGCTGGACACAGCCCACATGGCCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-43-41,44-41,45-41-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=4.0)
A:
NA
C2:
PF0000822=EGF=WD(100=60.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGTCCCCTTCTACAACTA
R:
CTTCGAAGCCAGCCTGGTG
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development