BtaALTD0012841-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36713472-36729971:-
Coord C1 exon
chr2:36729871-36729971
Coord A exon
chr2:36729796-36729870
Coord C2 exon
chr2:36713472-36713636
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TCAAAATCTGCATTTCACAGGAA
3' ss Score
6.6
Exon sequences
Seq C1 exon
GAGGAGAAGGGAGGGGCATTTAACGGTGGAGGCTGGTTCTGCGCCGGATCCGGGAGCTGGGCGGACGCCATTGTGCTTCGTGGTCTGCTGTTCTGCTTCAG
Seq A exon
GTAGAGGCCTAGAACTCCGAGGAGGAAGGCGGCGGTGTGATCGCTGGGAGCGGGACAAACCCTGTTCAGTGCCAG
Seq C2 exon
GAAACCTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTGCTAGCTCTTTAAGTGCTAGGTTGATGTCTGGAAGCAGAGGAAGTGGTTTAAATGATACCTATCACTCAAGGGACTCTTCCTTTCGACTGGATTCGGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755-0-1,2-1,3-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.961
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTGCTGTTCTGCTTCA
R:
CCAGTCGAAAGGAAGAGTCCC
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development