BtaALTD0013459-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23031255-23031676:+
Coord C1 exon
chr13:23031255-23031355
Coord A exon
NA
Coord C2 exon
chr13:23031517-23031676
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CCGCCCCAACTCCCTCTTAGATG
3' ss Score
6.12
Exon sequences
Seq C1 exon
AGGTGGGGAGGGAAGACGACGAGGAGGAGGAGGCGGAGGAGGCGGTGGAGGGGAGGTGGGGGGAGTCAGCAAGGACATGGCTCCTGACTCCTGTGCGGAAC
Seq A exon
NA
Seq C2 exon
ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-3-0,4-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138311=PHD_2=PU(48.6=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCAAGGACATGGCTC
R:
CGCAACAGCCTCCAATCATCT
Band lengths:
118-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development