BtaALTD0013477-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39948137-39949507:+
Coord C1 exon
chr19:39948137-39948275
Coord A exon
NA
Coord C2 exon
chr19:39948893-39949507
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
TTCCGTGTCCCTCTCTGCAGTTT
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTCTCCTCCTCGGCTTCCTCCTCCTCCCACCACGAGGCCAGCACTCAAGAGACTTCTGAAGGCAGCAGGGACTCCAAGGGGAAAAAGTCTTCCAGCCATAGCCTGAGTCACAAGGGGAAGAAGCTGAGCAGTGGGAAAG
Seq A exon
NA
Seq C2 exon
TTTCGTCCCTGCAGAGCTCCCCTGACTTCTCCGCATTCCCCAAGCTGGAGCAGCCAGAAGATGACAAGTACTCCAAGCCCACTGCACCCCCCCCTTCAGCCCCTCCCTCTCCCTCAGCCCCGGAGCCCCCCAAGGCTGACCTCTTTGAACAGAAGGTGGTCTTCTCTGGCTTCGGGCCCATCATGCGCTTCTCCACCACCACTTCCAGCTCAGGCCGGGCCCGGGCCCCATCCCCTGGGGACTATAAGTCTCCCCATGTCTCGGGGTCCGGGGCCTCTGGAGGCACCCACAAGCGGATGCCCACACTGAGTGCCACCCCTGTGCCCGCTGAGGAGACCCCTGAGACAGGCCTGAAGGAGAAGAAGCACAAAGCCAGCAAGAAGAGCCGACACGGGCCAGGCCGTCCCAAGGGCAGCCGCAACAAGGAGGGCCCTGGGGGCCCAGCCCTTCCCTCCCTGCCCGGTGCCCAGCTGGCTGGCTTCACCGCCACTGCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532-8-23,9-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGCACTCAAGAGACTTC
R:
TGTCATCTTCTGGCTGCTCCA
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development