BtaALTD0013501-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015962 | MMADHC
Description
Bos taurus methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria (MMADHC), mRNA. [Source:RefSeq mRNA;Acc:NM_001034541]
Coordinates
chr2:46663171-46664675:+
Coord C1 exon
chr2:46663171-46663257
Coord A exon
chr2:46663258-46663261
Coord C2 exon
chr2:46664169-46664675
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGAGTAATT
5' ss Score
0.85
3' ss Seq
TCATTTTTTATTTCTTCCAGTTT
3' ss Score
9.15
Exon sequences
Seq C1 exon
TTCATCAGCGGTGCTAAGGAAATTTGCTATGCCCTCCGAGCTGAAGGCTATTGGGCTGACTTTATTGACCCATCATCTGGTTTGGCA
Seq A exon
GTGA
Seq C2 exon
TTTTTTGGACCATATACAAACAACACTCTTTTTGAGACAGATGAACGCTATCGACATTTAGGATTCTCTGTTGATGATCTTGGCTGCTGTAAAGTGATTCGTCACAGTCTCTGGGGTACCCATGTGGTTGTAGGGAGTATCTTCACTAATGCTACACCAGACAGCCATATTATGAAGAAATTAAGTGGAAACTAGCAGTAGGGTCAATTAATTTGATCTTATGCTTGTAACATTTGGGATGATCCACAAGCATTGTCAAAGGCTTCCTACTCTGTTGTAGGTATTTATTTCAACATTATGGATTACAATATTGGCAAGGGTTTATAATTTTTAAATTTCAAATACTCATACTATCATTAAATACATGTTGAGCACATCCACATTGTACAAAATGTGATAATTAACATGTAACCAGGGTATGATCTCATATTGTTACTTCTTCCCTTAATTGGAAAAACCTCACTTTTAATTATACCTCTCCAAAAATAAATCATACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015962-11-13,12-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102294=DUF2246=FE(10.1=100),PF133151=DUF4085=PD(12.6=48.3)
A:
NA
C2:
PF102294=DUF2246=PD(22.5=95.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCATCATCTGGTTTGGCA
R:
GCAGCCAAGATCATCAACAGAGA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development