BtaALTD0013802-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51082540-51082929:+
Coord C1 exon
chr22:51082540-51082656
Coord A exon
NA
Coord C2 exon
chr22:51082804-51082929
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGCAAGT
5' ss Score
3.16
3' ss Seq
CGCCCGGCCACCGCCCCCAGGTT
3' ss Score
7.16
Exon sequences
Seq C1 exon
CCACTTGCCTTTGGTGCAATGGCGAGGATTACCGCGGCTCAGTGGACAGCACCGAGTCAGGACGCGAATGTCAACGCTGGGACCTGCAGCACCCGCACCCACACCCCTTCGAGCCCG
Seq A exon
NA
Seq C2 exon
GTTTCTGGACAAAAATCTGGACGACAACTATTGCCGGAATCCGGACGGCTCGGAGCGGCCCTGGTGCTATACCACCGACCCGCAGATGGAGAGAGAGTTCTGCGACCTCCCCCGCTGCGGTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-6-5,7-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.674
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(88.1=92.5)
A:
NA
C2:
PF0005113=Kringle=PD(9.5=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGGACGCGAATGTCAAC
R:
CGGATTCCGGCAATAGTTGTC
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development