BtaALTD0014051-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14226970-14227328:-
Coord C1 exon
chr25:14227226-14227328
Coord A exon
NA
Coord C2 exon
chr25:14226970-14227142
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGAGCAGGT
5' ss Score
-4.42
3' ss Seq
CTCGGGCTGCTCCTTGCCAGGCC
3' ss Score
5.54
Exon sequences
Seq C1 exon
AGAAACAGGCGACCGCCAAGGCACTGAAGCAGAAGGACAAGAAGCTGAAGGAGGCCCTGCTGCAGGTGGAGGATGAGCGCAAGATGGCGGAGCAGTACAAGGA
Seq A exon
NA
Seq C2 exon
GCCGAGAAAGGAAACCTGAGGGTCAAGCAACTCAAGAGGCAGCTGGAGGAGGCGGAGGAGGAGTCCCAGCGCATCAATGCCAACCGCAGGAAACTGCAGCGTGAGCTGGACGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCGAGGTGACGGCGCTCAAGAGCAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988-54-55,55-55-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTGAAGCAGAAGGACAA
R:
CCTCAGGTTTCCTTTCTCGGC
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development