BtaALTD0014061-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30164780-30165145:-
Coord C1 exon
chr19:30165045-30165145
Coord A exon
chr19:30164967-30165044
Coord C2 exon
chr19:30164780-30164822
Length
78 bp
Sequences
Splice sites
5' ss Seq
AGGGTACTG
5' ss Score
4.5
3' ss Seq
TTTTCCTTTTTCTTTTATAGAAC
3' ss Score
12.53
Exon sequences
Seq C1 exon
TTGACTTAAGAAAGAAGAGGCAGCTGCATTGTTTCCATAGCTATCCATATAAAAGAGCCCTTGGAATGAGGCTGACTCGTCCTGCTTTAAAAAGCTCCAAG
Seq A exon
GTAAGTGGGAACAAGGACCAGACTCTCAAGAGGGACGCTAGCCGCACCACCCCGTGTCGGCTGCAGCTGCTGCCTAGG
Seq C2 exon
AACCGTCTCACTTCCAGGCTGCGTCTTCTCACTTGGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTTAAGAAAGAAGAGGCAGCT
R:
TTGTTACCAAGTGAGAAGACGCA
Band lengths:
143-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development