BtaALTD0014200-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58208365-58212841:+
Coord C1 exon
chr10:58208365-58208590
Coord A exon
NA
Coord C2 exon
chr10:58212760-58212841
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
TAGTTTAAATTGTATTTCAGTTT
3' ss Score
5.1
Exon sequences
Seq C1 exon
GAGGATGATGATCACCTGGAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTCGCTCAGTGGCTGTGTAATCGCAAGATCGTCACAACCTCCGAGACAGTGGTGAAGCCCATGACCAGGCCCCAGGCTGTCAATGCCAGGGATGCACTGGCCAAAAAGATCTACGCTCACCTGTTTGACTACATTGTGGAGAGAATTAACCAAGCCTTGCAGTTTTCAG
Seq A exon
NA
Seq C2 exon
TTTTGAAACCTTTGATGTGAACAGCTTTGAACAGTTTTGCATCAATTATGCTAATGAAAAGCTGCAACAGCAGTTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-11-14,12-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGCCAGGGATGCACTG
R:
TGCAAAACTGTTCAAAGCTGTTCA
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development